easYGet

easYGet comes with easYPipe.

easYGet makes it possible to download all at once the mx ‘PROCESSED_DATA’ from a synchrotron for a given beamline (several dates possible) and a given acronym.

Downloaded processed datasets are organized by dataset folders, ready to launch easypipe.

For the moment, only works for data from Grenoble ESRF and Barcelone ALBA synchrotrons.

easYGet usage

easyget.py [-h] [-s {ESRF}] [-l LOGIN] [[-m MX] [-b BEAMLINE] [-d DATES [DATES …]] [-p PROTEIN] [-g GROUP]

optional arguments	description
-h, –help	show this help message and exit
-s {ESRF}, –synchrotron {ESRF,ALBA}	which synchrotron? (default = ERSF)
-l LOGIN, –login LOGIN	synchrotron login (your personal SMIS login)
-m MX, –mx MX	name of mx proposal synchrotron login (Example: ‘mx—-‘)
-b BEAMLINE, –beamline BEAMLINE	name of the beamline
-d DATES [DATES …], –dates DATES [DATES …]	date of the run (format AAAAMMJJ) or list of dates for the same run (format AAAAMMJJ AAAAMMJJ)
-p PROTEIN, –protein PROTEIN	protein acronym or space if no acronym (manual collections)
-g GROUP, –group GROUP	group added via MxCube3 as a supplementary folder level before acronym

Information can be provided either in command line or in interactive mode in a terminal, or mix.

For example, you can simply run:

$ easyget.py

or:

$ easyget.py --login anna2502 --mx mx1000

or:

$ easyget.py --login anna2502 --mx mx1000 --protein myprot --beamline id30a1 --dates 20210131 20210201

other commands are possible …

Note

test also the day after each date given (useful for 24h experiments …)

What does it do ?

Processed data @ESRF: for each crystal collected, several proccesses can succeed and for each a zip is available for download

All these processed data are copied this way by easYGet:

• dataset folder for each dataset

  • PROC_1, PROC_2, … if run 1, run 2 …

  • process sub-folder, with processed data for each process